NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167631_1008649

Scaffold Ga0167631_1008649


Overview

Basic Information
Taxon OID3300015168 Open in IMG/M
Scaffold IDGa0167631_1008649 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1500
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell Glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.156854Long. (o)-50.082619Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016286Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0167631_10086492F016286N/AVKRPGRGALLALLLLAAACGGGLKTVSRDGYRAILAFSKDERFEVAVRHEWKRVEARMDGAPLIKIMRPDLKQVWQVRPTTKKILDTPWTPTDEIVPGYPLEPNFDPRAYADRFGGTIRKIGDAAHGLHPCDRWEMSLPSGDLVTLWVARDLEGLVVKIEHAKKDQGDEYQPFNTIELLDARPGADPDLFEKPKGYTQVKTYQDLLK*

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