NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167631_1002909

Scaffold Ga0167631_1002909


Overview

Basic Information
Taxon OID3300015168 Open in IMG/M
Scaffold IDGa0167631_1002909 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2435
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell Glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.156854Long. (o)-50.082619Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090536Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0167631_10029094F090536N/AMRPVHKALLAIVALGIVLVVALLLYRRMGPLPTLTDRDIAGATAITSQWSEIGPVPALKPSGKQSLVILELEGDYTPDFQTQMLRFPDGSSGMPEVQLVDQQGQVFTLHFLMVHHRDRTGSNVMGGAGFGAPDLPTDRSYGKVRVRSDKPIKCSKIIWRG*

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