Basic Information | |
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Taxon OID | 3300015168 Open in IMG/M |
Scaffold ID | Ga0167631_1000031 Open in IMG/M |
Source Dataset Name | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Bristol |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 42822 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (69.05%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
Source Dataset Sampling Location | ||||||||
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Location Name | Russell Glacier, Kangerlussuaq, Greenland | |||||||
Coordinates | Lat. (o) | 67.156854 | Long. (o) | -50.082619 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002175 | Metagenome / Metatranscriptome | 587 | Y |
F050694 | Metagenome / Metatranscriptome | 145 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0167631_100003124 | F002175 | AGGAG | MAILTSTPGAENQVSIYDVPDDVLAQYAISGDKAAQMFPESKAAGTDIPKGTPEMSPSRLENADGLAEVQAYSSICICKELVCNPWRCWWHYYYCYC* |
Ga0167631_100003125 | F002175 | AGGAG | MAILTSTPGTDNKVNIYDVPESVLAQYAVTGEQAAQMFPESKKTSSAEIPQSGGANSVKVENAESLGEVQAYSDICVCRELLCNPYGCWWNYYYCYC* |
Ga0167631_100003131 | F050694 | N/A | LSYIGPFRSLTESKTSPIVLLNPRGDEKIMDFLLTFNDDAALVGNLGGQVRTERRPAHLSSQDWQVGLSNNYLEPEHGYNEAGMPFQNMTGDFRFENGQVKVVRLEGVKPYETFSDEGSGLSVRAVFLSHLNQWAVAE* |
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