Scaffold Ga0167631_1000031

Overview

Basic Information

• Taxon OID: 3300015168
• Scaffold ID: Ga0167631_1000031
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42822
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (69.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell Glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156854
  • Long. (^o): -50.082619
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002175	Metagenome / Metatranscriptome	587	Y
F050694	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167631_100003124	F002175	AGGAG	MAILTSTPGAENQVSIYDVPDDVLAQYAISGDKAAQMFPESKAAGTDIPKGTPEMSPSRLENADGLAEVQAYSSICICKELVCNPWRCWWHYYYCYC*
Ga0167631_100003125	F002175	AGGAG	MAILTSTPGTDNKVNIYDVPESVLAQYAVTGEQAAQMFPESKKTSSAEIPQSGGANSVKVENAESLGEVQAYSDICVCRELLCNPYGCWWNYYYCYC*
Ga0167631_100003131	F050694	N/A	LSYIGPFRSLTESKTSPIVLLNPRGDEKIMDFLLTFNDDAALVGNLGGQVRTERRPAHLSSQDWQVGLSNNYLEPEHGYNEAGMPFQNMTGDFRFENGQVKVVRLEGVKPYETFSDEGSGLSVRAVFLSHLNQWAVAE*