Basic Information | |
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Taxon OID | 3300015168 Open in IMG/M |
Scaffold ID | Ga0167631_1000009 Open in IMG/M |
Source Dataset Name | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Bristol |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 263999 |
Total Scaffold Genes | 224 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 151 (67.41%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
Source Dataset Sampling Location | ||||||||
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Location Name | Russell Glacier, Kangerlussuaq, Greenland | |||||||
Coordinates | Lat. (o) | 67.156854 | Long. (o) | -50.082619 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001578 | Metagenome / Metatranscriptome | 669 | Y |
F006673 | Metagenome / Metatranscriptome | 367 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0167631_1000009174 | F006673 | AGGAGG | MIARVIMIFSFLLFPFYFFLDSAHTQTPQASRGVIRLKVKFKSGDVTKELPRKRFFLIKGGLAENRDLINQLKAIQPISRECYYRRQGVSEALIKWLREHDCDSVYCREIEEKYLSGNDAVPEFQAAYNQGLSEFKTPELARRWLSVNLPAGIRDGFYNEKQRIINNLIAQAEAATATKILSVMTDRKGTAYFSDIEPGIYTISNLVGSETEKTSILWACEREVKAVDLAIAMRRPFTLTNEPDPKVKCEIVERPLPVCDK* |
Ga0167631_1000009198 | F001578 | GGGGG | MTWDGDDLAGQAEEVFERQQAAADARAHRGTSTVEERARSAKFETLRLSRSRIMGQLSRATNPAHRTMLESALKSINDEMGE* |
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