NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167631_1000005

Scaffold Ga0167631_1000005


Overview

Basic Information
Taxon OID3300015168 Open in IMG/M
Scaffold IDGa0167631_1000005 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)336876
Total Scaffold Genes294 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)184 (62.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell Glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.156854Long. (o)-50.082619Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001368Metagenome713Y
F008187Metagenome337Y
F011244Metagenome293Y
F033618Metagenome / Metatranscriptome177Y
F080657Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0167631_1000005175F011244N/AMSSTDELKRKLRELEAEFDRELLARGFDPAQAENVALPSHLAKLYTEHEQLKAQLEELEGKTND*
Ga0167631_1000005199F008187AGGAGGVRIKPIIIFATLVLLFLPARLSRPATATPNANTVYLFIEIEAKVYRKDVPISNQNPSERRWYFSNVVVQPMDVPTYSLIKQKIMPYFSRNVMDPFEARGFALDYGEQDVRLNGEVSKANYETRAEAEEQRNKELEYRKGQSGNIYSFELVFTGTPKGEETSKPKLIYRDKEQQNYGEAK*
Ga0167631_1000005202F033618N/AVKQPKRKHVFDFPRTVLLIEIERRCSFPDCNAKKQVGLTKQEAIEYRGFECFQCEQWNDDRLKQSELPDSWTASD*
Ga0167631_1000005235F001368GGAGGMNRDSATTDRLRNLIAKLQSLTIGGGLNWEKQAGSAHRYARWNNHLVILGPATPLSEKSVPRYLFITPFDSPDCIEINSDDADLGPGVIKLAQEVEVASQNEPATDPFAITDQLLQRLET
Ga0167631_1000005272F080657GGAGGMKRTVVLCGAALLLIATAVYAFGDIARPKTTPTPEQGKIVFHTGLQVVPDSKSYEARLQISQETLQRIREATANMSANTSTTQRLMQSSTRTVMAGLFMFLAISFAGVWLARSTQRRSQKAIAAVLLVAGTLGAATVIVRANAGPPGYYYWQKLPENLTKGETTRGGLNIEIVPGDDGIKLIVPLRNTKKPGEE*

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