Scaffold Ga0167631

Basic Information
Taxon OID	3300015168 Open in IMG/M
Scaffold ID	Ga0167631_1000005 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Bristol

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	336876
Total Scaffold Genes	294 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	184 (62.59%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

336876

Total Scaffold Genes

294 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

184 (62.59%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.156854	Long. (^o)	-50.082619	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Russell Glacier, Kangerlussuaq, Greenland

Coordinates

Lat. (^o)

67.156854

Long. (^o)

-50.082619

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001368	Metagenome	713	Y
F008187	Metagenome	337	Y
F011244	Metagenome	293	Y
F033618	Metagenome / Metatranscriptome	177	Y
F080657	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167631_1000005175	F011244	N/A	MSSTDELKRKLRELEAEFDRELLARGFDPAQAENVALPSHLAKLYTEHEQLKAQLEELEGKTND*
Ga0167631_1000005199	F008187	AGGAGG	VRIKPIIIFATLVLLFLPARLSRPATATPNANTVYLFIEIEAKVYRKDVPISNQNPSERRWYFSNVVVQPMDVPTYSLIKQKIMPYFSRNVMDPFEARGFALDYGEQDVRLNGEVSKANYETRAEAEEQRNKELEYRKGQSGNIYSFELVFTGTPKGEETSKPKLIYRDKEQQNYGEAK*
Ga0167631_1000005202	F033618	N/A	VKQPKRKHVFDFPRTVLLIEIERRCSFPDCNAKKQVGLTKQEAIEYRGFECFQCEQWNDDRLKQSELPDSWTASD*
Ga0167631_1000005235	F001368	GGAGG	MNRDSATTDRLRNLIAKLQSLTIGGGLNWEKQAGSAHRYARWNNHLVILGPATPLSEKSVPRYLFITPFDSPDCIEINSDDADLGPGVIKLAQEVEVASQNEPATDPFAITDQLLQRLET
Ga0167631_1000005272	F080657	GGAGG	MKRTVVLCGAALLLIATAVYAFGDIARPKTTPTPEQGKIVFHTGLQVVPDSKSYEARLQISQETLQRIREATANMSANTSTTQRLMQSSTRTVMAGLFMFLAISFAGVWLARSTQRRSQKAIAAVLLVAGTLGAATVIVRANAGPPGYYYWQKLPENLTKGETTRGGLNIEIVPGDDGIKLIVPLRNTKKPGEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0167631_1000005

Overview

Ecosystem & Geography

Associated Families

Sequences