Basic Information | |
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Taxon OID | 3300015168 Open in IMG/M |
Scaffold ID | Ga0167631_1000004 Open in IMG/M |
Source Dataset Name | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Bristol |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 399660 |
Total Scaffold Genes | 371 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 213 (57.41%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
Source Dataset Sampling Location | ||||||||
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Location Name | Russell Glacier, Kangerlussuaq, Greenland | |||||||
Coordinates | Lat. (o) | 67.156854 | Long. (o) | -50.082619 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018453 | Metagenome / Metatranscriptome | 235 | Y |
F051803 | Metagenome | 143 | Y |
F103797 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0167631_1000004139 | F018453 | GAG | MAFTEDELKALRLLLREELQAEVRPFRNEVGKRFDEVATQMDGLYQRDEKREQEYLSIREQIRRLESRFA* |
Ga0167631_1000004227 | F051803 | AGGAG | MNSSISHAKAPGRKDQLIKRTSFVWVTLLIILFIAPSALAQEVAETIRVRTRVVFMDALVKDKKTGIPISDLKPENFELFDDGKPRTISYFTREGQARKPLAIVMILDLRDDGAGRFLKRPEVRKAIVEELAKLPPGDEVAILAINLNSVDDKTAVIRNGKAMWLTEFTRDPAQFDAALARVPALVAPAPEVNKTDAPKKDEKDAPRESSGSVSVSTDTTATEPKISADAKSNDVLETETIKGKNGAVITRTIRKDGSTDVKRVSKDGKVSVQLDNVYDMAGATRDATHLVEEKRPNSQAAVIWLSDGIAPIFYEDRDATEQILIRQNAIFNTLTVDMRTLYKFLLPFGQPLIGWTGISLAGSAKRLAKTSGGEAVHVSRVSDYGAGLAKIFGNLTARYSLGFALSEEEKDDGRMHELAVRVKALDAKGKQRKLDVSSRRGYYMPKTEADQAAANK* |
Ga0167631_1000004240 | F103797 | AGG | MKELRERGLYRLPDGAELVASPAARGGGYALYDPQVWKHYGLPDYQIDAKGRLSRMGESTPWSDEDLIDTGQTAA* |
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