Scaffold Ga0167631_1000004

Overview

Basic Information

• Taxon OID: 3300015168
• Scaffold ID: Ga0167631_1000004
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 399660
• Total Scaffold Genes: 371
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 213 (57.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell Glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156854
  • Long. (^o): -50.082619
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018453	Metagenome / Metatranscriptome	235	Y
F051803	Metagenome	143	Y
F103797	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167631_1000004139	F018453	GAG	MAFTEDELKALRLLLREELQAEVRPFRNEVGKRFDEVATQMDGLYQRDEKREQEYLSIREQIRRLESRFA*
Ga0167631_1000004227	F051803	AGGAG	MNSSISHAKAPGRKDQLIKRTSFVWVTLLIILFIAPSALAQEVAETIRVRTRVVFMDALVKDKKTGIPISDLKPENFELFDDGKPRTISYFTREGQARKPLAIVMILDLRDDGAGRFLKRPEVRKAIVEELAKLPPGDEVAILAINLNSVDDKTAVIRNGKAMWLTEFTRDPAQFDAALARVPALVAPAPEVNKTDAPKKDEKDAPRESSGSVSVSTDTTATEPKISADAKSNDVLETETIKGKNGAVITRTIRKDGSTDVKRVSKDGKVSVQLDNVYDMAGATRDATHLVEEKRPNSQAAVIWLSDGIAPIFYEDRDATEQILIRQNAIFNTLTVDMRTLYKFLLPFGQPLIGWTGISLAGSAKRLAKTSGGEAVHVSRVSDYGAGLAKIFGNLTARYSLGFALSEEEKDDGRMHELAVRVKALDAKGKQRKLDVSSRRGYYMPKTEADQAAANK*
Ga0167631_1000004240	F103797	AGG	MKELRERGLYRLPDGAELVASPAARGGGYALYDPQVWKHYGLPDYQIDAKGRLSRMGESTPWSDEDLIDTGQTAA*