Scaffold Ga0167631

Basic Information
Taxon OID	3300015168 Open in IMG/M
Scaffold ID	Ga0167631_1000002 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Bristol

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	662932
Total Scaffold Genes	524 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	306 (58.40%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

662932

Total Scaffold Genes

524 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

306 (58.40%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.156854	Long. (^o)	-50.082619	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Russell Glacier, Kangerlussuaq, Greenland

Coordinates

Lat. (^o)

67.156854

Long. (^o)

-50.082619

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001208	Metagenome / Metatranscriptome	747	Y
F011026	Metagenome	296	Y
F040574	Metagenome / Metatranscriptome	161	Y
F045665	Metagenome	152	Y
F106157	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167631_1000002107	F106157	N/A	MEEFLKTLTGRGVDVFCGATSSMRGHVAKVENGVLHLQDEDGDICYIAIEKIIAVWEKHDKERHSGFVNRG*
Ga0167631_1000002133	F045665	N/A	MNNEEPTTIRPFVFTVIEDDGVNVTIEIAEEDYLADLAAGCDEDETMKPGRYLFKRGGFVERHPEFKSKMRTASNERRRRSIE*
Ga0167631_1000002167	F040574	N/A	MSLLARFRRKKEDPEVARRALLLRAGRVGEATVLGTDVDGDGNSMLSYSYTIGGADYQAFQRLDAGQLLRENDYVPGSRVPLRYDPRRPANSFVV*
Ga0167631_100000226	F011026	GGAG	MESRAFTVRNALILIILITFATGVHAQESNNTRDRRVSNAPAAEATIAVNEQFLNSFLTAIFDNLQEPSMPLTIGGAAPNAQCASEIRLKREVGGVRTAVHFENGRILGPLAFAGAYYQSYLGCIEFSGWANSEVNLEFNAERRALVARFHLRDIHLNDVPAIANGPLLGMVQTAIDRRYNPVDLFTLEQLSTSVNIQPAKGALQLRAKEIRPEITPAGLTLHIFYEFVKG*
Ga0167631_100000254	F001208	AGAAGG	MEEENVNLSWEIRVSEGRAGTDPEAPDWEVAELENGVVKKKEDIYDNLTFAEAQQIAGMWTKKKDDAEGAVESDSELVS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0167631_1000002

Overview

Ecosystem & Geography

Associated Families

Sequences