Scaffold Ga0167628_1052391

Overview

Basic Information

• Taxon OID: 3300015165
• Scaffold ID: Ga0167628_1052391
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3A, Proglacial river margin, by glacier terminus)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 831
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell Glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.152116
  • Long. (^o): -50.048697
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063739	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167628_10523911	F063739	AGG	MSTLEIPTHVTFEQTQVARYRAFEETAGGFELPSTESSDRHLFFSLPGATALPAVIFYRTRHTGKPAFSVRLNDAPVTRYTFVAGDEAERSWHEIVPATTNGLPTLRETDNELVFFARDGSVVFGDVVLLYTSHQTTVPVTLTTANHEVTAG*