Basic Information | |
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Taxon OID | 3300015162 Open in IMG/M |
Scaffold ID | Ga0167653_1000023 Open in IMG/M |
Source Dataset Name | Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Bristol |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 123484 |
Total Scaffold Genes | 110 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 79 (71.82%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
Source Dataset Sampling Location | ||||||||
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Location Name | Storglaci?ren, Tarfala, Sweden | |||||||
Coordinates | Lat. (o) | 67.900879 | Long. (o) | 18.43474 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000265 | Metagenome / Metatranscriptome | 1420 | Y |
F002416 | Metagenome | 561 | Y |
F009773 | Metagenome | 313 | Y |
F093407 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0167653_100002311 | F093407 | GGAG | MATLEQILEEARKLPVAEQRRLAAALNGSDSNGDTQPAYRTNEQERAWINAHRDEYLGQWVALDGDRLIASGADARTVYEAARAQGVEIPYIDRVEKKVEAFMGGWQ* |
Ga0167653_100002359 | F009773 | GGAGG | MRVRPVRPNIYLPVVRFGVADSDWFSVLLISCAGYLVPVPLGLTVFYVPLQMWTWLLATAGSIAFFNYIRIGRRPYWLNHKLKSLLLHHRQYRAVPNGRKSAFNRSWLIDGQTDDTSFGRNRSPAAAGAQTISLLEQNDRFQEDCAERWHTHLLTSH* |
Ga0167653_100002360 | F002416 | GGAG | MNNFVEALNIPELEQSRVARAGRKLIMFGLTMKALHGAVAIALMFVFGVVSASAQTPTGSFFNGNSSQLGNSFRSVTFFLAAAMIIAGIIFVAIGIVTSGLRESLSTWKFITGAGCFAFGGICAAIYAFSQGDTVPLDNQF* |
Ga0167653_100002388 | F000265 | AGGA | MPEQRGKQATDDVKSEWTRAYQIYLKAPGDRYDKKKDRTSRIDSVAHELSLTRKQAKRRVRNFEAWQRNIKKGLVEP* |
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