Scaffold Ga0167653_1000023

Overview

Basic Information

• Taxon OID: 3300015162
• Scaffold ID: Ga0167653_1000023
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 123484
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (71.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.900879
  • Long. (^o): 18.43474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F002416	Metagenome	561	Y
F009773	Metagenome	313	Y
F093407	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167653_100002311	F093407	GGAG	MATLEQILEEARKLPVAEQRRLAAALNGSDSNGDTQPAYRTNEQERAWINAHRDEYLGQWVALDGDRLIASGADARTVYEAARAQGVEIPYIDRVEKKVEAFMGGWQ*
Ga0167653_100002359	F009773	GGAGG	MRVRPVRPNIYLPVVRFGVADSDWFSVLLISCAGYLVPVPLGLTVFYVPLQMWTWLLATAGSIAFFNYIRIGRRPYWLNHKLKSLLLHHRQYRAVPNGRKSAFNRSWLIDGQTDDTSFGRNRSPAAAGAQTISLLEQNDRFQEDCAERWHTHLLTSH*
Ga0167653_100002360	F002416	GGAG	MNNFVEALNIPELEQSRVARAGRKLIMFGLTMKALHGAVAIALMFVFGVVSASAQTPTGSFFNGNSSQLGNSFRSVTFFLAAAMIIAGIIFVAIGIVTSGLRESLSTWKFITGAGCFAFGGICAAIYAFSQGDTVPLDNQF*
Ga0167653_100002388	F000265	AGGA	MPEQRGKQATDDVKSEWTRAYQIYLKAPGDRYDKKKDRTSRIDSVAHELSLTRKQAKRRVRNFEAWQRNIKKGLVEP*