Scaffold Ga0167623_1011024

Overview

Basic Information

• Taxon OID: 3300015161
• Scaffold ID: Ga0167623_1011024
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2678
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell Glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156516
  • Long. (^o): -50.06387

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167623_10110241	F001079	AGAAG	MAAPVPPAAPFVSWSTSTAAIVPAARWPVVFAALQALKGHVQEYPGCQRLEAFVQTEASGGVRVHCYTTWDTPEQREVYLERGYTFERMLDDAADIVAEPGRLMEKVF*
Ga0167623_10110242	F000805	GGA	MPSGDTPQDADAYYRYLQGHQQTMQDPSAWHVRAVDLLWMWGFVAVLSLLLVLWVRQYRSTRQAQGLYSIDTFGGYTTELAGPTSLFFLLLSAIVVAFALVLIVGHLVWGQKF*