Scaffold Ga0167642_1001170

Overview

Basic Information

• Taxon OID: 3300015160
• Scaffold ID: Ga0167642_1001170
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5478
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.082186
  • Long. (^o): -50.322297
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064932	Metagenome / Metatranscriptome	128	Y
F075734	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167642_10011702	F075734	AGGAG	MKMNAVVLAALALFATLAHAEDYLSPTEERVRLSLGVVHLSNSTNLQLDSSAGVPGTAVNAEDVFGLDKSDYEAKIQAMVRVGERHRLWFDYFSLDRTASMTMTQPIVFRDVVLQPGDPVNSDLSIRTFGITYGYSFLHGDKYEVAATIGISDTDISARARVQTQARHVDQSEDQAGPVPNVGLNATYVVSKRFYFDGRAQYLKVRVDDLDGSLGIYELDALYRLRPNISFALGYSMFKASLVSAQTKQSGSFNFNSKGPEFFVRIAF*
Ga0167642_10011706	F064932	N/A	MQSKVVALLAAEGNREATLLVRRGDGQFALARIDARVAAATRLAARYAPAPAYRGALETGADR*