Scaffold Ga0167622_1002648

Overview

Basic Information

• Taxon OID: 3300015158
• Scaffold ID: Ga0167622_1002648
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1A, Ice margin)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6385
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell Glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.15650902
  • Long. (^o): -50.06398397
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030715	Metagenome	184	Y
F038200	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167622_10026484	F030715	N/A	MGCCFAGELQSEPAAENDDEASLKPGEEIKCQSPDGKFAMLLTSDEFGYKVNLVEASSRKVVVELAANVAYPPVKDCKLLWAPDSQRVAFYEANRRGGDTTVYFRNDSGFTESAVPKLGGCATAAQKKELKTKGVLKFIEYNAVPKEWLKSGALVLVDDQGWETIDGELRGCTQTVTIAFDAKHKASVLRVADKKPKEY*
Ga0167622_10026485	F038200	AGAAG	MKVFLVAWLGVCLVAGAAEEKEIIRDKSPDGKFALRFTRDDKGFWEAAIISLKSKNEEVGLEIYQNGYIERAHLVWSKDSQRVAYFEPNRRGGGTKVYFRKASEFEEVSIPYGDPSEGDFAACEANRAEKSSGDTSGKDAEATSRPVKWLRSGELVLAIHFERLMESGTTRACGQTITIAFDSDHKASVKSVKQRD*