Scaffold Ga0167632_1000002

Overview

Basic Information

• Taxon OID: 3300015085
• Scaffold ID: Ga0167632_1000002
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4B, Ice margin, adjacent to proglacial lake)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 259151
• Total Scaffold Genes: 249
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (42.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156805
  • Long. (^o): -50.082499
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000116	Metagenome	2132	Y
F029836	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167632_1000002196	F029836	GGAGG	MKKLNSFTVLVLTMSALFFAGASRSFAGQSEYYSRGADGLLRMKHSPVLGINIPIAVWIDGREAGAFAKGHVYERSLSPGRHTIYASRPSQRYDSYYGTLDVRPGETYSFVVKCTVNHVHLVPVSRID*
Ga0167632_100000274	F000116	N/A	VKPGGQTSPPAQQQIRPPPLSQHLREFAGNQHAWAVLARNLIPVVGIYAFGWSAALSVFSYWFDGLTALMAIITAMIPRALRESQPPSPEDSTDAKIWRDKPARQQGPAAKLTGQMKAIVTGVVTWIFMVGIVGLPYWIVLIPLHPLLLGDEVRYQLAHSAGLWFTFGSLAAGHFWKAFQSGYDAMPDDQLKQRVRWDVYLLVLRAVAMFIMAAHGLYFILVPLMALLLTYMEVWPQRVLGAVFGDPSRLWEYDPDKERKK*