Scaffold Ga0167654_1015552

Overview

Basic Information

• Taxon OID: 3300015084
• Scaffold ID: Ga0167654_1015552
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5a, rocky medial moraine)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1261
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcales incertae sedis → Candidatus Methylumidiphilus → Candidatus Methylumidiphilus alinenensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.901082
  • Long. (^o): 18.428257
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013455	Metagenome	271	Y
F069065	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167654_10155521	F069065	AGGAG	MARLNGKIGFWGRIGSAFERSDIAGADYDASGDDEDAVRPTSTRYAPIRQAVERRVKSFLRQDLVSHLEIGFNEIFVLHYIEIAADKQGAEELEQFLQEFPPDSRVHWVKKLLGPAVGQHVSVEQFLGLDREFSAEELAETDPFEEMLNQTARSV
Ga0167654_10155522	F013455	GGA	MEDAKADDAKADAMTPVETDIETFRAPWPGVLVEMKAFVELWFLALGNRRRATALRILISKALVSQAKLQPHMQEFRASMPRIPDCRIEIKGTELAAHQIEIEYRR*