NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167657_1000042

Scaffold Ga0167657_1000042


Overview

Basic Information
Taxon OID3300015079 Open in IMG/M
Scaffold IDGa0167657_1000042 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6b, vegetation/snow interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35004
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (62.16%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.865505Long. (o)16.714941Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051032Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0167657_100004230F051032AGGMKLSFRTALLLAAALLTIFGAVGDALVVLPDLHGDLIEIGVRPTVLGGTVIRLYFSALAMFGFALIVSAAAIQSMRGVVPARLTLAIIALIYTVFGVMAFSRSHNPHQLGSLAVGVLLTAAIAIPRHRIAEVKVDSD*

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