NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167660_1010718

Scaffold Ga0167660_1010718


Overview

Basic Information
Taxon OID3300015078 Open in IMG/M
Scaffold IDGa0167660_1010718 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11a, vegetated hydrological feature)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1001
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.904687Long. (o)18.610965Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057235Metagenome / Metatranscriptome136Y
F081244Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0167660_10107181F081244AGGAGMDISSSRFLTGAPMLTKCSNPFCPVPFRYLEDGRLFRLESDLATRPSKCNRVEYFWLCHRCSTTMMLSLREDGRVVTDLRPEPIPGVPDGVALTSTDRERVIVS*
Ga0167660_10107182F057235GGAMPDDWNEHDDIAAGTMCPMADCGALAVAYTSTDGVGRDHSQPWEFTCPRCGIDFTVPEDELLFQSVPKEWLLARVHAA*

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