Scaffold Ga0167649_100920

Overview

Basic Information

• Taxon OID: 3300015063
• Scaffold ID: Ga0167649_100920
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3b, vegetated patch on medial moraine)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4091
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.900853
  • Long. (^o): 18.44175
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017742	Metagenome / Metatranscriptome	239	Y
F020926	Metagenome / Metatranscriptome	221	Y
F046442	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167649_1009202	F020926	N/A	MKQVLVLVLLGVAALAGDKPTVSQCFRVHSLTRTDGEHYWADWTNTCPYTIDSVYVMIDFWDKFHKRLGDGVWGLHFITQGAHRVTRFSAPRGVDSFEFVGIRKVTTDSDEALR*
Ga0167649_1009203	F017742	GGA	MTSLLFCQQARELLDELGETIRDLIRLHEEQFQSLLGGDLDGSRFDPLIHMANERKNEAKYAYLHHLETHGCSTFDESDEK*
Ga0167649_1009204	F046442	N/A	MSLTKSERAKITDTVHSIQSARASLADIDEDKVPEVDEIQDCLESSDKKLRVALRQAPDKKN*