Scaffold Ga0137405_1069824

Overview

Basic Information

• Taxon OID: 3300015053
• Scaffold ID: Ga0137405_1069824
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3179
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000941	Metagenome / Metatranscriptome	826	Y
F017462	Metagenome / Metatranscriptome	240	Y
F019181	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137405_10698243	F017462	AGGAG	MRVFLRSSNDVSAVVGVLLLVVPTYFVAMSALRYDAPGLRYFDSPILILGTLAFAFAVNARSILSVKLEPEKPPVLKIALSLRIWNLAEILLALLLLGALFAYAFVENFEPRLIR*
Ga0137405_10698245	F000941	GGAGG	MMNVTCNDRERIFEGGAPGEWAALEAHSANCPVCAEGLRVWKSLSVAAQEMRDYTDSPSLWPRIERALAEEAVRKTQRAQRRSWLSLLPSIPLGWQTAVAGAFVLVLTISAGWIYFHRSNRIVESDKSLLKSAALENVERAEAVYVQAIDKLAAEAKPQLENPATPLLANYHEKLVVLDSAIADLRAQAGQNPSNAQLRHQLLAMYQEKQRTLEEVLEARQQ*
Ga0137405_10698246	F019181	GGAGG	MNLAARTSRKGSLRLAAVTGILSALLLIAGKPALAASSAQEQVSRDFQKTVTLGAGQSVRVEHKFGEVRLHGESGRDVKISATIRAQASSHEEAEAFAQKIQIEVLQSSEGVRIKTIYPEEERKWFHLSKSSSWSVSYDIGMPSDA