Scaffold Ga0181338_1022442

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1022442
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 983
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F012211	Metagenome / Metatranscriptome	282	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_10224422	F012211	AGGAG	MPTDDERFKYECWAVVQELDPDDIADAIQDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTPWVDDIEELQHYRNLRIERVQKALEERKIMEAKMDGPFQQMFDE*
Ga0181338_10224423	F009140	AGG	MIDLTHAATDNNSVSFHYQRYLPELERFGYVINYQEKWHLTEYGRMEMNRAISGAAMRIESGSIREPYDGKELRRNISRRGCYDFLKYPSRFGDSQIYKV*