Scaffold Ga0181338_1003668

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1003668
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2662
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035733	Metagenome	171	Y
F065546	Metagenome	127	Y
F095011	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_10036682	F065546	GGA	MTMLTTPTQIEGARLLTLRSMLMLEMIGMKRSRAPSAYSMLKTMGFKGTRGQVLAELDAVRKELIGKE*
Ga0181338_10036684	F035733	AGGAG	MNENMPDNAHFYASSVADWVTTNDKRDLRELLKMMDGFGYPYNLFLVPVAHDANYEIKMYQPQVEGTKWLGYFETKKGKKK*
Ga0181338_10036687	F095011	AGGAG	MNQENYNRLEAMLGRAYMLGSQVINGEVPEGALAEEVSGECSELLALLDGDMGAFGQPELIDPELLALASALQPQGESK*