Scaffold Ga0181338_1003324

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1003324
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2810
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F015354	Metagenome / Metatranscriptome	255	Y
F023295	Metagenome / Metatranscriptome	210	Y
F067530	Metagenome / Metatranscriptome	125	Y
F068565	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_10033242	F068565	N/A	MLTERSIFSLCEVLPSTVLQVRLADQIVDGEVVKASTFRRYCLAPGSDLAGQPEQVVAIAGAVWTPAAIAAYNANLKPAIQ*
Ga0181338_10033243	F002843	N/A	MIVPVDIISVQVNADNSLFVTTGIDYDSDGAIVGSEITSQYTLNPGDSLEGQPTEVVSIANALWTPAVVAAYKAANPAPDNSVPVS*
Ga0181338_10033244	F067530	N/A	MQTLTLTLDPATANALITALEVARRQGDFAVARTAVSVISELIRQDEEFKKLNPPVQVQTAE*
Ga0181338_10033246	F015354	GGAG	MNPNLSSLIRHGLTAVGGFLVAKGLASADQVGELAGAVVTLIGLVLSMIKNKKATAPTPPPAA*
Ga0181338_10033247	F023295	AGGCGG	MLLSMLHGIGCQTRVILVPDGQPVQLAEPVRAKVFAFDATGKPVPSSNKVMLPAGWYVLPRK*