NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181338_1003284

Scaffold Ga0181338_1003284


Overview

Basic Information
Taxon OID3300015050 Open in IMG/M
Scaffold IDGa0181338_1003284 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2826
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y
F043770Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0181338_10032841F043770N/AMELQKRIDQLREQGFNNFALQDRPGPKPTKANCGRFYPLNKEKRGWANNGDEVSRDLVNYVNKFPGLYTLHYSRALLTSGTESFEIDTRPADEQTPQTFNLADMDERNKDE
Ga0181338_10032843F000710N/AMATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNGLQLRVTLTINNDVVIDDVVAHELGASVNTGITSGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI*
Ga0181338_10032844F006697N/AMANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNATAGQTFFQFFNNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIVGSAVNNLVDHMNLNITVGNQVVLKDFDPSFNATTRGLAFDRLHSGFNSGQNVEVRLLTEIVIPPQVNFKADLQLSNLGILANDDLTIIFKGYGRIFSAGNSF*
Ga0181338_10032845F002259N/AMGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIGFFIPSAADGIAYGGLNDNSVKFSLVIGNKTVLKDITCEFGGEQAFYSDGAVGSSVIDLEGVGILIPPQVEYYVEAKAFTAGGRVALSTRLGCYLFGTGALLNFNTTI*
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