Scaffold Ga0181338_1002771

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1002771
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3058
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F042709	Metagenome / Metatranscriptome	157	N
F065363	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_10027711	F065363	N/A	GLSVIDPATLKLIATVVYQGVQALSVVFRGQVVTAARQRITELYNGNNFNVQNLNKLTGRQISDQITAIDSQINMTPRTQFGRQMALARFRLIYQQRFDQVAGGGGIGNLPGWVLPAALGLGAFLLLRGRK*
Ga0181338_10027712	F042709	GAGG	MNPLVLAGAVALFFLLRKRPPVVDNTTPEVVPFTAANVNAYKNLNTTSTFDNRLAKEARRVTPDGTGKNIVDGSYKCFAPGNQTRRNEIIKVYEDLDRLQTRINNSTGERREEARKDRREKDDQRAILVGEHYMICEAFFDELKKKAATPQQTVIITAPQAQQTRTSL*
Ga0181338_10027714	F004838	N/A	MTAQDKILYVANKLGLTSLKDMQASTGAVYDVDTDHSGQIFSSASRHQNPSVTNLTQNQFEVNEALLVESIAFYNFDNEDGNQLSNIQNTYGSQAVIVFDLIIGNKRTMKSTPVFGSGTPFTFATSGIVNLAPAATSQINPRNQIFLEGAGILIPPQVQWYVEYQIFNMVTGAVIPTNEAARNIGCYLFGTRVLLNFNTSI*
Ga0181338_10027715	F002287	N/A	MSQINKLAYVDNKLGASSQGQQTTRILFNTITAPGTTSGLIFFKTFQGLTNGQTNLVQNKLDASESMIIKTIMLMQYNTEGTLLPFGGNEQQTLSVIVGNQQVVKGLPIQFNQGRVGQAFDRLHSNAAVGTGGTATFQRQTNFPCEIRLLTDIVIPPQVSFEVRVDSNNAVYGTGAVVCALSGYGKIFSAGNTF*
Ga0181338_10027716	F000710	N/A	MSNGINMISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGIRFSATTSAAPQTIINAMQLRITLTINNDVVIDDVVGHDLGASTGAGITSGFPNFIPFPRALTGQDTIILRVTNSSGASAILNTTVYYKNEI*