Scaffold Ga0181338_1000152

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1000152
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15192
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F040160	Metagenome	162	N
F058252	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_100015210	F027487	N/A	MACFTSLPYHNKFYPLLITVSAAASITPISFGCFDAASDASRLYQFYLAFATIGGLTPVTENCFVQTTEDQQLFVLNEAVDAALIDR*
Ga0181338_100015212	F025268	N/A	MSEQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRTINDTYCDTDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTINNEAGYDLCAIRVKIAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNSDTAFNAGLATFNESDPATWARLVRVPRYIKVVIEQGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGEAQQMTQNYAGDWDWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCEVQNYIVPENNQDCYSCAGVGDIVVPS*
Ga0181338_100015214	F040160	N/A	MTTEKVKSLCAAITAHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKSSARNKEPKDGAIDPDLDEI*
Ga0181338_100015217	F021128	AGG	MKLKNKNLAPVGGWYFKYEIKRDKLTFPAIVYGSTMNSLMQNIRKDYTSNGIEVPTDIEQIVEDQVCQRQPSNRCWYSDGIGDKIAQAIHTVAAATDKVLGTKLEHKARGCSSCNRRRNALNSLS*
Ga0181338_100015218	F023326	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCIKHNINISDFKLLSPHEHFINAVKLQWPSDVSIYNRGYTNNQLLRTLEELCNNTDICLAGAASMGKSFPVGLWIYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCAAVQIGKLIDYRHMIVWGGGSNDEDRDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITAKVNLSANNDITFIGIGNPSAGDNPHTRWAMPSGASNFDSVSPSMDRWETGTGVCLFYNGMRSPNFDAPVDEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNANTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGFIRGTRNRVIYLDSQKVIQLSANAASEFEIQLGTEVVSLCRAAGVKPSKFGMDVSGDGGRVGQAIIREWLRFDSGGASIALISSMGKPTDRLAAEVDKRPCKDVYDRLVSEYYYSCYHAFKSRVIYGVDSASDLGRELCLRRYTIKNKKIAIETKDDLKSRTGYSPDLSDSLIYALEMARRNGLVFIGNDKVVPTNRFWARQEKPVEYSQDEEYSVDDWGED*
Ga0181338_100015219	F058252	GGA	MITNKTFEPRVICEGTEVSENQYKILFQQKYNQCWVPKKDIRLKENLGVLDGQNIIRIVVPEEVANFLELQGIMD*
Ga0181338_10001529	F017989	N/A	MATPALSQPCFVDLTPDQQNFNIYESLKQIAGFDIPAYDQIDISYYGSTNNIATVQYLKDGNPVATLTLTYAIQPPVANDANLTTASVAYP*