Scaffold Ga0181338_1000081

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1000081
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23927
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F032264	Metagenome	180	Y
F082578	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_100008117	F082578	N/A	MAVGDSFFIPTLRPAQMNYAADIAAKKSRIKVKIYTCEREGHLGIRVWRTA*
Ga0181338_100008120	F000843	N/A	MPLYQITPAQLPQVWPIVAPMLQRAIDLDPELNTAEQVEFAVRTGRTYLLIWDEPGEGITGAVTVDIIDYPRERVAHVNLMGGKSIVRTHVFDEAKNWMRLMGATTTQCWAKGTLVQMYEKMGMTNTHQVMREKL*
Ga0181338_10000817	F032264	AGGAG	MKDYSNYETQRSILIEYLQVMIARCDWHGVADVAMDLREMEAERRTIMEKQ*