Scaffold Ga0181338

Basic Information
Taxon OID	3300015050 Open in IMG/M
Scaffold ID	Ga0181338_1000061 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300015050 Open in IMG/M

Scaffold ID

Ga0181338_1000061 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28960
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (28.85%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

28960

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (28.85%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F075040	Metagenome	119	Y
F089880	Metagenome	108	N
F097609	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_100006110	F089880	N/A	MKKKPELELFSPTQEGIIVPLSKYLNQMAEFAKAEWPGISISETHIKKAWAKLQKNEYLGDDAPDEMLEMYEKMSADSDMAEEMAEERLALPVVEAEVELTEDEPVNESLALVESVKQGLELSSFTTKFDIGSGMTQCVPRGEVEMKDWVAAFAFGLTLESGAQWIIGDSVVALENAGHDDVVNQLCANFKKSYPTVSGYARACRAFPAAKRDPMLPFTVYREIGNANFGEDSAKKQQELLEAAKNEKLSSTEVRNRVRNEQGKDDKPSGHRFLLLNVGNFSNSEVLRSMPQEVQEHQLLIDLGDKSWFDPAEGEWMKFGKEA*
Ga0181338_100006114	F015061	N/A	MSEQTPQNETSKAVMEAFTFIKSGDETLNERVHAMASLLHTASMMVIKSESRKGEGFECIRYLELAFMYYQNAQFRKRFDEPEKEKEESRIIT*
Ga0181338_10000614	F075040	N/A	MEKNLIMKDTPTVKKESVESVETAVIAPTLQREIYLRLVSAAAADGKFELGKLPNARAVVEQGDHLKGVSELLAACFEK*
Ga0181338_10000619	F097609	N/A	MSNQLDGLEPKDIIKKVTGKITKLFPEKQHEGNYGPYTIQNGEIEVDGKPYKLTFWKNTQPESAKGRTVTLSSTRGKHGMNGVTFEEESYKNKEGQQIHNQVIKVSASAKVEYDGVSEEPPRVSSTPKVIVTDNAEQALDQIVEMHQYIDSLVRMAYLGKVTDEETLRAYVSSVFIEANRKGIHYSSKVEAPKKEEPTEEETNPEDWASAIVPSGSQKGKKLAEIGKPALTKLYEYYLDKGFATPFAKCVEKAAADLSLDAPVENDDIPY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181338_1000061

Overview

Ecosystem & Geography

Associated Families

Sequences