Scaffold Ga0167669_1001593

Overview

Basic Information

• Taxon OID: 3300015024
• Scaffold ID: Ga0167669_1001593
• Source Dataset Name: Arctic sediment microbial communities from supraglacial cryoconite, Rabots glacier, Tarfala, Sweden (Sample Rb cryoconite)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19112
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Rabots glacier, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.910855
  • Long. (^o): 18.470863
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F019636	Metagenome / Metatranscriptome	228	Y
F070899	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167669_100159310	F003439	AGAAG	MTVNHSRSQNAALDEGASDGKYRKRRPNTTVIPGDGDQTVQKNRDGLHVFMNYGYINSEYSDKVNPGR*
Ga0167669_100159312	F070899	AGAAG	MELSHTLLTDSTGSGMAGAEDVSLEQQKRLKETYYNGSKPCVEGCGNTLNPVQSLHSGTCSSCSRRKHSELLKGKMA*
Ga0167669_100159314	F019636	GGAGG	VAGRQADGVYGRRAWTAPLEAAYPPQQYIGPFASNAERLVSQSLAANTMTGIELQTYVRPPLPQIKLFPDRFGYETSEIGVRDILQLSRYSNQRVNPDFSQTAATTQSSSRNTLGTSI*