Scaffold Ga0157376_12015649

Overview

Basic Information

• Taxon OID: 3300014969
• Scaffold ID: Ga0157376_12015649
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 615
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035346	Metagenome	172	Y
F064832	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157376_120156491	F035346	GGTGG	MNNNRGAIACLVVIYAIASGLSYVTFRRYPDHSGTAAVQWLLFYIVTVVYPLIWTVQNLRLVRKLGLDHSQPLRRFVWAPVIVGGTSLLT
Ga0157376_120156492	F064832	N/A	PLPVPAPVDFATRQRIVDDLLANGVTARWQAVAATLDDAARALDRVASARSAGVTLVAQVDPSVCRMIQQEMSYLSIQMVFWCAPWFYWVPEPCGMATSAYLGVAAVGWWYGC*