Scaffold Ga0157376

Basic Information
Taxon OID	3300014969 Open in IMG/M
Scaffold ID	Ga0157376_10000015 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014969 Open in IMG/M

Scaffold ID

Ga0157376_10000015 Open in IMG/M

Source Dataset Name

Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	275370
Total Scaffold Genes	252 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	128 (50.79%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

275370

Total Scaffold Genes

252 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

128 (50.79%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003710	Metagenome / Metatranscriptome	473	Y
F008503	Metagenome	332	Y
F010067	Metagenome	309	Y
F081482	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157376_10000015159	F010067	N/A	MTDDDQRSDEARENFAYFSNEYAQALQAFKTIEAQSSTLLLMGVSDELRGFIEQFITMASGTKALAEERGETHFAEWFGELIRKAEALRGEIVPH*
Ga0157376_100000152	F008503	N/A	MKKTLIVVALIALVVWVISWFRVPEAVTASAAKPWPGGGSLDSVDNRFPPSQANAASAKLMALAKALPKNDAIGAFVGRETARGELAIGGSPALPDVTAIRELLLREPIVWQRREGIGGGNDLNAERAAQMSVARALVATALVKVRANDPAAWDDLHAAWNLARSLDGHPQMMVRTAAMTIARMINAAAWKMPVPAPAWLGELQQRDAVPQLLESYQFQTASYAKDGLRLFPTKMLADSVDHDRGIAEELAKETRCDVKPRANELGVDLTSVWRRAFRYRAEREATANALRAREGHPIERTSRCSDGQWTFDTTMVRFTHDIAPVAPDRGMPLALRVKP*
Ga0157376_1000001573	F003710	N/A	MLIKGMTEQEIRVLQEFRRLAVESLGVAAIKAIKHPAGGGEGPAFSLVDKGMLTTDAARENFSLTEKAKEFLSYDPKPEFEEAGSAVEEPVVVE*
Ga0157376_1000001576	F081482	AGG	VVESHFGLLNAVQRPQVTMLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157376_10000015

Overview

Ecosystem & Geography

Associated Families

Sequences