Scaffold Ga0157376_10000003

Overview

Basic Information

• Taxon OID: 3300014969
• Scaffold ID: Ga0157376_10000003
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 568634
• Total Scaffold Genes: 545
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 320 (58.72%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009712	Metagenome	314	Y
F010845	Metagenome / Metatranscriptome	298	Y
F038723	Metagenome	165	Y
F064021	Metagenome	129	Y
F105755	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157376_1000000310	F010845	N/A	MLLLMVACQKAEPLTAAKANQIIDSYRFAAEPIYAEVPQKVFWNPRFPKDEYDDRSLRTFDNLRNAGLVTVTGGPNADGAEYVAHVTPKGFPILGTAPSARGPVFRGLICYKTYDGLRNFERHPTEPTTGHGELVWHYTRPTALYPLFETKKNKPLDKPFVSLVSFYYKDHQYRFDVTVRKTDAQ*
Ga0157376_10000003176	F064021	AGG	MKNTLLAVSVAALTLAGCTSAMNTALPPGRMSDAGIIRPCHRDHRDAQVCGNAIFNQTVIAQIHTGQTLTDVRAIMRHEAERRTVDGSNESWGYITNYDDKVMTWIAFTDRKVSAVTQQPWVRD*
Ga0157376_10000003284	F009712	AGG	VSAIFGRLFQLIGMIILPIGLLTGLLKDNVNLEVRLLFIGGAIFLLGWLMAKKTA*
Ga0157376_10000003323	F105755	AGGAG	LIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHVDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSASWESD*
Ga0157376_10000003367	F038723	GAG	MSDQRFDMLSSSESGLTYVREKRGGVMRVLTESELADFNDPPPCPQCAEQFGCEHFNCAGEAMLSEDEIESVAPPQWIVFAKACGISREDLDRLKLIEEHEGEYRVAPGADMRTQEIVLLLNER*