Scaffold Ga0157379_10072572

Overview

Basic Information

• Taxon OID: 3300014968
• Scaffold ID: Ga0157379_10072572
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3080
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013685	Metagenome	269	Y
F042555	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157379_100725722	F013685	AGGA	MKKLLKCLLLGVLIGDVLLPSTVQAQFTVFDPAQYSLQIERQIEEANRWLERVRQYSEEINKLAEQLSTMKGVLGQAEKLVLHNNNLTRTMAQIGQTVRDVFALKRAIESMVVSRLSMIKSIKTRLVNGIFDPEADLRDFEDYLRNSIGRQEQDKIATMNRIAMFDATLARLYHDLQTAQARQAATAQQMKIAKDKVDAELTKTQADQCANCISDLKVEIASCEKMIVDLDAQITSLSTQIEDRVKRYNLTMEERVRIANRVKATDEAWSSLNIVKDSIFEAIQRGGVPSPSSQK*
Ga0157379_100725723	F042555	GAG	MKYTRTIFIGILFVLLLLPGLGQAQSPSPTPAPSPARSLSDNIAALSQRAASLLPYIDKEIVSKLIGWFELLGWIFGNCLAGFAMLRIAREENGEGGNLYWWFGRLALFFVLSGTGLTIVNGLGAIGYEIANGNESTQRSILQTLYLAQRDSFNESYAKFQQNMFTVKVDGRETAVNPVPLDTESILGIIVDTDSSLPNLDQKADVSQWDLSTMMTWLNFERALIEFGDLILVLLGAALALGMKLAMPFMLACIVDKHIASKTTYPFFYGVIALTLVWPSVSKIIRIVAYMWG