Scaffold Ga0157379

Basic Information
Taxon OID	3300014968 Open in IMG/M
Scaffold ID	Ga0157379_10000327 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014968 Open in IMG/M

Scaffold ID

Ga0157379_10000327 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37946
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (74.55%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

37946

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (74.55%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020723	Metagenome	222	Y
F027879	Metagenome	193	Y
F036861	Metagenome / Metatranscriptome	169	Y
F042947	Metagenome / Metatranscriptome	157	Y
F047145	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157379_1000032728	F036861	GAGG	MVVEQAGQVASSTIEAMKSTPLAIALLVVNMAFLGFAAYVLGEVAANASERNKSQLELITNLVRDLRDCRQGPPT*
Ga0157379_1000032734	F047145	N/A	MTLVFVTSGAWGPGTGAPNSAAQVDGNFYDVDQRIVALNADLDEGKRIDTVTYTSNSMTFHFTDGTTQTIPLPIAIISYVGQWTNSTPYARGQMISVRSLGMFQVLVDHTTPPMPAAFDPNATDGSGNPLYQFWMPLYDVNYDAAIFVPGTVQRAAGEVLFQAVANRTMQLASGNAHAYAYLDVGIGAGTNIIISIQKNRVQIGTITFTAGAALDAGGGQSGAFNIPATAQLAEGDTWSLKVTQSNNAAPTGLSVTLPFLRTDI*
Ga0157379_1000032740	F020723	N/A	MTLTPRQIAAYLEFGEQLDRSDRANDLAIAAIGAQGDPKSIEKTLKDLGG*
Ga0157379_1000032744	F027879	N/A	MTIDYSAMLYDPVYAEIGVPAVFTVVGADTGAEITVIDDTRPKLLPTGSSAGAEVQSVGPGAFVRIPELTAKGIARADYGDAVLAFNGRSWIVRSWELRGSPNGEDFGEVRFSLKAGAVG
Ga0157379_1000032750	F042947	GAG	VIVNLSEEASNAMLDVLAGMMDGGSIKLFSDEGKTLAVLKLSDPSVRAAIDRELVFNQIAEEDAALAQGTASSARVDAADGTEVFSCDVGDQNSDAVIRLNTTKIYRDSPVRLKSFRLAMP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157379_10000327

Overview

Ecosystem & Geography

Associated Families

Sequences