Scaffold Ga0134523_1021940

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134523_1021940

Scaffold Ga0134523_1021940

Overview

Basic Information
Taxon OID	3300014963 Open in IMG/M
Scaffold ID	Ga0134523_1021940 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from elderly subjects during probiotic consumption in Boston, USA - meta_42827d56
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2852
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Elderly Subjects During Probiotic Consumption In Boston, Usa

Source Dataset Sampling Location
Location Name	USA: Boston
Coordinates	Lat. (^o)	42.3601	Long. (^o)	-71.0589	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N
F101191	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134523_10219401	F101191	N/A	CMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEITERVTTLTPKQTRKPLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA*
Ga0134523_10219403	F042910	AGGAGG	LADRLYCALNGTTLHDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRPREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC*

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