NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134315_1007858

Scaffold Ga0134315_1007858


Overview

Basic Information
Taxon OID3300014962 Open in IMG/M
Scaffold IDGa0134315_1007858 Open in IMG/M
Source Dataset NameSurface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1736
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100733Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0134315_10078584F100733N/ANKTNRKGNKQMNTTQKNKLQFNCTCHGCRNYPTRPAEIWHESQIPGKERGTYYFTREAMRFFSSRISDFKSINRAGDKIASLSVIVSSRHGYEGAERYYEIVILCPFGTINRHGVTFENLRKARKNWDAALESFPACECHGCQIERAGR*

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