Scaffold Ga0134315_1005988

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1005988
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2033
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10059882	F003714	N/A	MPNANHPYTDTVTFAGRPLHLKRPMAVFAAKRLEAILPQIAALNAAGKSQADAAAALDTTVCSLRTWLDLTNTTWVNLNRRGPYKKRA*
Ga0134315_10059885	F003583	AGG	LLAVTLLTAFAGLSAFASAYIAGYVLDQLQNTEALALIVTDGGLKSDSANLERNMSWATMALKSVRDLGWALSVGCLGVGFAAFLRSKR*
Ga0134315_10059886	F001923	N/A	MSAMNPEEIPHEVKDGLVASVLGGLAMTARLLLSTEPVTVGWVIRRVLAAAITAAIVGYAIQDHIQSPGLRMGVVGACGYCAPEVADYLLRYIKARGEKEVGAVTNAKGKAKGKRRR*