Scaffold Ga0134315_1005733

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1005733
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2079
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002241	Metagenome / Metatranscriptome	579	Y
F005585	Metagenome / Metatranscriptome	395	Y
F043835	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10057331	F005585	N/A	SLVTPYGREGSRMVIRDTTYYAFTKSRDCSVFSSETHLTWRWSLSQQNSAELWKVLEGKIRISISLDIPLSWVSLDLSMIGMTLTLTRNSNTSQWCDICKQRWGQMKDGSWHLKAQTPAFWKVVSESPQRKGITRFYCNPCADEVQNWPDGSFYSLKEQLTDALTKYAKERAINVELS*
Ga0134315_10057332	F043835	GAGG	MSSYLEDYVGVQERLKQFITQFPDYRIKTHVLTESLLKECDVYIVKVELFRTEADPNPWTTGLSSESKSKQYALELAETGALGRALNLGGFFAKPNGSANQSHFKPIQTTNPKLAEFVKEQRPNDPEPIVWDTAAIAAELGAEIVDEVPLCNHGLMVLKQGMKEGKEYRGWVCSSKNRDDQCPAKWMKIGSDGRWEFRK*
Ga0134315_10057333	F002241	GGA	MGGKGIRRPHSIEYIRQLMAWGFDKEFIAKDAGITVESLNMRLYRAEKRERSEYQGDEPTPSGDIVDCG*