Scaffold Ga0134315_1005482

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1005482
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2129
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10054822	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSDCDFLGNGCYAEQTEKMYPNVRPAGMQNVITEKHRIRAMILDAIRQGKSIRWHERGDWFLNGELDTNYVSNVMWACESIIADGTKLPDMWFYTHIYDSRLVAFEKYMAVYASIHDANDKAEAIAAGFKLFAWCDSDQKVAPKRPRSKVKADAWRAALPKLVIIDDAKYIVCPEIRRGRGVVTCTPTKGSVTCDLCVRGLGNVLFPSH*
Ga0134315_10054825	F089832	GAGG	MPKYYIKCGTLELIYSCNKKPFAAAVGALWETNKFDILDEYFYVDERGLKDYASALPDTHVYSIKKVAKKAGWTLGKNSEEK*