Scaffold Ga0134315_1002212

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1002212
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3559
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y
F030690	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10022122	F030690	AGGA	MQRSEVEIICNHMLGRVIVSCEALHGDSTIVITLDDDSLIEISGEELSIYGDLTPRDD*
Ga0134315_10022123	F002037	GGAG	MNKVYWLFIIVMAALAIWGTEKALAQTTTILAPDGSVTVCQVGSNGIVICV*
Ga0134315_10022125	F011384	GGAG	MYTKLDDQRQAKFIVNYIQEHPSCSIKDIVQQCVVARSRLKYLESQGYFNLPKLTHKDVLDRRFKNRVSVTVGREYGRWIGY*
Ga0134315_10022126	F019123	GGAGG	MVDSKPLTQEEIIKIYKAAFGYGSQVITLDRIFKFARLLEQAHGVKDVH*