Scaffold Ga0134315_1001193

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1001193
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4975
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F049442	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_100119310	F026552	N/A	MEIEKVVEKLLNRNSILNLLDNDIIKKFEVVKNPNSDVVLVIKMFLNATEDELVGTGESSPKLSETELKDKLWKDYNLDTAWWQVSIIPNRILKPLVGKHYFDNLLLFVLDKNGHYLFSET*
Ga0134315_10011938	F049442	N/A	MNKENLETGLTKLIRTFFTKRFERDFSDLKVVLDEYEEDADDIDEEGNWVSAESYYFTIYSNNFNGLSISEMYDLARELFGNILGSKNWIDIQFLKYPL*