Scaffold Ga0134315

Basic Information
Taxon OID	3300014962 Open in IMG/M
Scaffold ID	Ga0134315_1001104 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014962 Open in IMG/M

Scaffold ID

Ga0134315_1001104 Open in IMG/M

Source Dataset Name

Surface water microbial communities from Bangladesh - BaraHaldiaSW0309

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Tennessee

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5209
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5209

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Bangladesh: Bara Haldia, Matlab upazilla

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F057320	Metagenome / Metatranscriptome	136	Y
F086678	Metagenome / Metatranscriptome	110	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_100110411	F104766	GAGG	MEWISFFEKQPENGQGIWYYGSVIGVWCGEYMYSPDDPVSPHIIHCHESFGVVDRMDAPWWMPDDGVMVRPQRPDQPYPKDYPNYGA*
Ga0134315_10011043	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLDNGCYAEQTEKQYKNARVAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDCRLVSLEKYMNVYASVHDDNDMGEALAQGFKKFAWCDSDMKIAPKRPKNKAKADAWRAALPKLVVLNGTKFVTCPEIRRGRATITCTGTKDSIACDLCVRGLGNVLFPAH*
Ga0134315_10011044	F057320	GGA	MSYVGLYDDAGSKNAFYIIKDRKIGRKRIGFKEFENKQEAEFAHRVQKHLSQFDLAPMVYGDVGMIRRHDGELTAYGYLTEVAKPMPGCYDDEYCDGECFESECSNGTTISEVVCDLDEHGLTYADAHRGNFGFVRRKGQWVPVVIDVGIESFSDWDEDIYGNFEYDGDDCGCDCYDCVKARGAI*
Ga0134315_10011045	F086678	AGGAG	MAKYYIKCGTLELIYSCNKCPRDAAMDAIWETNDNDVLDEHIYLDERGYRDYTSADGHTTVLHTSHILKDAGWSIE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134315_1001104

Overview

Ecosystem & Geography

Associated Families

Sequences