Scaffold Ga0134315

Basic Information
Taxon OID	3300014962 Open in IMG/M
Scaffold ID	Ga0134315_1000210 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014962 Open in IMG/M

Scaffold ID

Ga0134315_1000210 Open in IMG/M

Source Dataset Name

Surface water microbial communities from Bangladesh - BaraHaldiaSW0309

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Tennessee

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15532
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (82.22%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

15532

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (82.22%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Bangladesh: Bara Haldia, Matlab upazilla

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F000868	Metagenome / Metatranscriptome	853	Y
F005092	Metagenome / Metatranscriptome	412	Y
F009530	Metagenome / Metatranscriptome	316	Y
F013526	Metagenome / Metatranscriptome	270	Y
F017484	Metagenome / Metatranscriptome	240	Y
F049499	Metagenome	146	Y
F074868	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_100021013	F000868	GGA	MSSFLENENQMVIDATLSEIGDQLVEDWINNNLDEGQLYSDWRIADMSDSNYLKGRFNEFYNLTPEDQYYLETE*
Ga0134315_100021018	F000684	AGGA	MTLGGYTYQVGDLFTTSKTGVTGRIIKFVPQTKNVTKVMLRLANGQQRFAMVKTY*
Ga0134315_100021023	F049499	N/A	MPDTIINMDYRMVDVLNSDQLEPDDLIDLDGEIVKVISISSLRYGYALTYENEFGEKDIIDILDDDTFDLYILE*
Ga0134315_100021024	F000808	GAGG	MEYTYSLTTSYDGNLVNTLRVSDLLEAVSAWNKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVTGK*
Ga0134315_100021026	F005092	AGGA	MNKLDKLELAIRLIANCKLCNGKGYFGWANGEDYDVEDCDCNIYGIILDEDGDVIYDNGLSTEYDLSIYATSEAN*
Ga0134315_100021035	F074868	AGGTGG	MTTLEKNIGLALGISAELENKIIHDFNNGGCKTTYGLNTRQRMVLVSILFGANAPKCYCIKCL*
Ga0134315_100021036	F013526	AGGAG	MKKNVLISFVTEAETDLQAIFNLNKIMQKLSDDELEKFDAFEVLNVIE*
Ga0134315_100021038	F017484	GAG	MSIEVFEINENGAGWSALENASASTKLDLELAILTKAEMKMLCFKCHVEIPRGNVCVNHKDVKGAIYFA*
Ga0134315_100021041	F009530	AGGAG	MKITYSIWQGSRLLSINNTATKITEIDKLIDDLNKSELGKKVKFSANVQEIEVKA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134315_1000210

Overview

Ecosystem & Geography

Associated Families

Sequences