Scaffold Ga0134315_1000099

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1000099
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25560
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013252	Metagenome	273	Y
F017424	Metagenome / Metatranscriptome	241	Y
F035623	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_100009915	F035623	AGTAGG	MSEYVYQIQGALENAQGQLKGLRVLVCDAYNMDIVDAPIEILDNETARFLQFRLKVSKQAVNIQNLPFSVQNKIRMPLGRWLDQWVRENFHGDTSKRKSINT*
Ga0134315_100009919	F013252	AGGAG	MANDNNLKGFRQVYQETGHLSSGGGPGEKNLDAGPSGSKRPNNAVKGKPARSSKVGPGKNLKDIGGGNFY*
Ga0134315_100009920	F017424	N/A	MKDFISEIIGRVKTERSNLADNVTAGMNVNTFEDYQRLVGRYEGFTIVLDIIESILTEDDEEV*