Scaffold Ga0134315_1000010

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1000010
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55836
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (78.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004305	Metagenome / Metatranscriptome	444	Y
F005294	Metagenome	405	Y
F026015	Metagenome / Metatranscriptome	199	Y
F032263	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10000102	F005294	AGG	MANVALIYDPRGHTFDSWASLMCELYATQQLSIPDAHTDWRQWGEGLKAIDVFTNEGIPGPAVFNDWQDWAQAVVGSIQPK*
Ga0134315_100001023	F026015	AGG	MGKVGYGGVANQSNTSDGFALGVGAQNVIGGTDYGLDVGDDGVVDVYGATPVTTFYIADETSPGYVLQENDDKIVLEAS*
Ga0134315_100001034	F004305	AGGAG	MAVTLKEEQSEAVRQQHRNAAGAWITGQEYQEQGSATQPKANSDHGNFEGGTKGIDKSNA
Ga0134315_10000106	F032263	N/A	MKEVWEKPRPKDLGKPEKLSPNQKKAAKAFAKKTGTKYPSLVANLQGAKAKKGGW*