NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134316_1001172

Scaffold Ga0134316_1001172


Overview

Basic Information
Taxon OID3300014960 Open in IMG/M
Scaffold IDGa0134316_1001172 Open in IMG/M
Source Dataset NameSurface water microbial communities from Bangladesh - BaraHaldiaSW0709
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2709
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012214Metagenome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0134316_10011722F012214N/AMSFTPDVPSNALGPNEYNSGYNVEADVRGIKKIFGEQEILTAVPHYGIFMEGGFRSETNWVYIVATRDSSSHGRWYMVTTAGITNITPGVGADPAAYLPGYTADLNITSSWVGNVFFINDTLSNPMYFLPSGNEIVVTPDADWNYDVGATSTRAGFVRNYCSPNVGNILIAGNITKVIGGTEYNYPTTVRWSQAFANTGYPATWEPTLSNVANEQEVPVRGPLIDGFFLGANFYVCSYWDTVVFSPISYQSTTAPIFGVRLLNQGRGLLNNNCWTNTDANVYGIDARDIWVFDGSNFTSIGNQRVKNYFFDNLNPTYYGRVFMVNNTQKYQIEIYYPDLNSTGWCNKMLSYRYDLQIWNAPKDIENACMGTEGPKVVSGSFNLASRSVIYARGDSADKKLIQTSVGNSFINNAAIPALFERTNLTMQTSTGPVPFSSKVYVHRLLPEISGTGSIEITVGGANSTAQDAIYGQAAHTEIDTNTPWVTTQQNNFRTIAVKVESNDATDAWNMTALNWQAQIVEDAF*
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Institute for Fundamental Biomedical Research
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