Scaffold Ga0134316_1000003

Overview

Basic Information

• Taxon OID: 3300014960
• Scaffold ID: Ga0134316_1000003
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0709
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27469
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (53.06%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F015720	Metagenome / Metatranscriptome	252	Y
F018171	Metagenome / Metatranscriptome	236	Y
F019637	Metagenome / Metatranscriptome	228	Y
F078616	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134316_100000316	F078616	GGAGG	VKIDMSKAVAAGWISFPEQAEVKQRTLTRNFAQAVEAFDSGLAWRMWNNGASRDEIARAIGCSRRGVQAVIEHGRINR*
Ga0134316_100000330	F018171	N/A	MANTQGTKYVFGSPASLALYDAAGALIVTGYVSPDIESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPSGASTANALLAASLPDVNGTCVITGAPVIEIGGYADAINAATGNRWIYAGGGSIKTTQTGKATGTITLKRYTNLTASGAATNL*
Ga0134316_100000331	F006107	GGA	MNAVALRAEKAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDEQDTMPNFPRLVVSSNSARPVQRTDLTCEVEIDVELQLSADDTDEDDVLTTVQVLDNRILPLFDQTGASALDAATNDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATT*
Ga0134316_100000332	F005024	GGGGG	MRPAVYMDVDTSRFDAALKQYLLTTKRDLHKAVNARFFYLLVRLFVLVPPKSPSTERRRIADYLGQPLGDVNRKSKKTGKRIGRSRLLRRVHLIAQAREAKAGRRGLYGEEMKEAARSLMRKSIASVGYLRSAVVKAIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKAHGVQAVPGWNPTAFVSMRTGIADNQYNRVAGIYNPAMQKALDDELVELTNHMTEAMLANGKVLEDNGIDIK*
Ga0134316_100000333	F009398	N/A	VTTIGSSLQQGMTVLQQMLGSPMFIWEGSSIRCIPAAVTDSNTPVPGGFQDNVTSRILVKFSDWKTCDSTLVSMDTTLYTLDQGTTFSRLQREDTGFVLLENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTK*
Ga0134316_100000335	F002621	N/A	MYNTAKHRSLSRMIWLAVLPTFLGCQTKVVLVPSGDPVMLAKPVRASVYAFDANKKLVGPSTVTLPSGWYVLPKN*
Ga0134316_100000336	F015720	N/A	MKNTKTTLAGVGAVMIAIGGALKAAFDGDPATTVDITATIAAVSAGIGLIWAKDADKKPE
Ga0134316_100000342	F009147	N/A	MAVQADISMEYSMGRQGFFPVTTTAAQTGNFSAVIPTEPTVFTSITGTGISGTWTGITLPAGFPLCGDITGFQLASGKAVAFLARAA*
Ga0134316_100000346	F006262	GGA	MVRAVFTYTVAIKRAYLRSVYSALGGVTLLAALSAKSIASATTIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLISDYELAVYFLNQDGIASPTDAQIYAKMMSVVLVAATSYGGDFSNFRREGTIRTGMT*
Ga0134316_100000349	F019637	N/A	MPNHLDFLVSQYGLANVAWFIRLLKRGTPPEQLASYCVPKPGDSRYDGVFRALQYAATLPESMIPEEIKKALQP*