Basic Information | |
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Taxon OID | 3300014921 Open in IMG/M |
Scaffold ID | Ga0169822_100120 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from infant at 4 months in Denmark - 591_4M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 85424 |
Total Scaffold Genes | 111 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (18.92%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark |
Source Dataset Sampling Location | ||||||||
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Location Name | Denmark | |||||||
Coordinates | Lat. (o) | 55.678 | Long. (o) | 12.531 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F044555 | Metagenome / Metatranscriptome | 154 | N |
F064817 | Metagenome | 128 | N |
F080163 | Metagenome | 115 | N |
F105375 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0169822_10012011 | F080163 | N/A | MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINRHNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEVLNSEIELLQEKLDLIREEICELIGIDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATKL* |
Ga0169822_10012014 | F044555 | N/A | MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLS* |
Ga0169822_10012024 | F105375 | N/A | MTNNEILQSTKQLDSLVTNLGLQITELFSLNLEEIIGYSNNLMGLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV* |
Ga0169822_10012026 | F064817 | N/A | MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI* |
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