Scaffold Ga0164310_10167463

Overview

Basic Information

• Taxon OID: 3300014913
• Scaffold ID: Ga0164310_10167463
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1350
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0151
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164310_101674631	F016098	N/A	RTQSGNGVRMRDGEIVYIASIRSLEAFLRGEQEYVAFAKMPYRRIPNEDNARNLIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTATELIEKVKSILEAD*
Ga0164310_101674633	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHSEQRAKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFDGEQKREEDENRDTF*
Ga0164310_101674634	F016235	AGGAGG	MSEEKISSSPPLFSHKQWSHRRGYQKCVKYIGIDKNNESFGGGFPLCAVIKFKFPIHRYTPRTHEIAKLLATLKLLYGEEYIEELNALAKVEYLKIRRRLKWLTHFGDGLD*