NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164310_10159258

Scaffold Ga0164310_10159258


Overview

Basic Information
Taxon OID3300014913 Open in IMG/M
Scaffold IDGa0164310_10159258 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1389
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0151Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F047684Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0164310_101592582F047684N/AMSKVIKGQVNVDRSVYTEFRKDMGFFYIYADCWSVVSEIINEGEDGKPAYHHEITEISETFVINGKRVKTDGFEELYVKLYGDGAFAKLLMEFENEVESEYYATTEYTPIKN*
Ga0164310_101592583F001217N/AMSTTKFNGFEKYFIQTALKNAIEEAEEDIKKLVSEGKRPIYAEGYFTMVGNEIIDKVNSMTLKKYQD*

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