Scaffold Ga0180301_10002188

Overview

Basic Information

• Taxon OID: 3300014911
• Scaffold ID: Ga0180301_10002188
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay16, Core 4569-2, 12-15 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15346
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0154
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038025	Metagenome	166	Y
F093028	Metagenome	106	N
F096386	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180301_1000218819	F093028	N/A	MNLQEYKKWKSPKSLKLPSGLEIKVRDLSPWDLLVAASKQKEYKPNDPQLIEHLMKRFIVWPEIGKDWEIDDIRPDDFVFLQTKLFESFSLERFDNAIKEVENIKERHKDFSE*
Ga0180301_1000218820	F096386	N/A	MSKEISVRPSDLLDPYHEEDAITRFAIDLVALVSDIERDPGIEGADIDPEEDSLRKRDLEFKKKYNITLEQAKKIVFGNSNGGCRQQ*
Ga0180301_100021886	F038025	N/A	MYLEMSKLKFTGLIGDAEILRRSFWWLYQKGWISKESVSEEDYGDLGLEFPNGYERFDREEIREERYMRTRLGKRISLERLKDLI*