Scaffold Ga0164321_10095326

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0164321_10095326

Scaffold Ga0164321_10095326

Overview

Basic Information
Taxon OID	3300014903 Open in IMG/M
Scaffold ID	Ga0164321_10095326 Open in IMG/M
Source Dataset Name	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1231
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location Name	Mexico: Gulf of California
Coordinates	Lat. (^o)	27.009	Long. (^o)	-111.4081	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001277	Metagenome / Metatranscriptome	733	Y
F018288	Metagenome	236	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164321_100953262	F001277	AGGA	MKEIKEKKMNRPKRDKEHMAIRRKNNFEDRYAKGIHFDIRSKGVCFITMQTHAGPLEVYIDSMDGLEDAPHVSARIPGRKVKELFVK*
Ga0164321_100953263	F018288	AGGAG	MKDMRELLDTFTESEWKKAKKEMTKRIPSMEIDKMTMDQFQTLARFLASPDFSDIDEYRRRLH*

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